Welcome to the BIDS + DataLad + PyBIDS Tutorial¶
This documentation will guide you step by step through:
Installing DataLad, git-annex, and PyBIDS
Cloning a BIDS dataset with DataLad
Selectively retrieving files
Running practical queries with PyBIDS
Note
This tutorial assumes very little prior knowledge. You can copy-paste commands as you go.
Contents¶
Tutorial:
- Using DataLad & PyBIDS with BIDS
- Prerequisites & Installation
- Key Concepts (Plain Language)
- Create a Workspace
- Clone a BIDS Dataset with DataLad
- How to access data from the Canadian Paediatric Imaging Platform
- Get Only What You Need
- (Recommended) Set Up a Python Script for Queries
- Common PyBIDS Queries (Copy-Paste Snippets)
- Practical Workflow Tips
- Minimal “End-to-End” Example
- Troubleshooting
- Next Steps
- Quick Reference (Cheat Sheet)